Motif IL_81168.2 Version IL_81168.2 of this group appears in releases 3.3 to 3.11

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6		7		8	1-6	1-8	2-5	2-7	3-4	6-7	6-8
1	IL_4V8P_247	4V8P	0.2784	0	Major groove platform with extra pair (H)	D1	LSU rRNA	C	2230	G	2231	C	2232	*	G	2201	A	2202	A	2203	U	2204	G	2205		cWW	ncWW		cWW		ncSH
2	IL_4PDB_001	4PDB	0.0000	0	Other IL	I	SELEX RNA aptamer	C	28	A	29	G	30	*	C	9	A	10	G	11	U	12	G	13		cWW	cWw		cWW		cSH
3	IL_5J7L_021	5J7L	0.2408	1		AA	SSU rRNA	C	440	A	441	G	442	*	C	492	A	493	G	494	A	496	G	497		cWW	ncWw		cWW		ncSH
4	IL_5CZZ_001	5CZZ	0.5978	0		B	RNA (73-MER)	A	29	C	30	U	31	*	A	42	A	43	U	44	C	45	U	46		cWW	cWWa	ncWw	cWW	ncSH
5	IL_4WF9_114	4WF9	0.6719	0		Y	5S rRNA	C	28	C	29	U	30	*	A	48	G	49	A	50	A	51	G	52	ncBW	cWW	ncWW	ncSW	cWW	ncSH

3D structures

Complete motif including flanking bases

Sequence	Counts
CGC*GAAUG	1
CAG*CAGUG	1
CAG*CAGAAG	1
ACU*AAUCU	1
CCU*AGAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*AAU	1
A*AGU	1
A*AGAA	1
C*AUC	1
C*GAA	1

Release history

Release	3.3	3.4	3.5	3.6	3.7	3.8	3.9	3.10	3.11
Date	2018-03-08	2018-04-06	2018-05-04	2018-06-01	2018-06-29	2018-07-27	2018-08-24	2018-09-21	2018-10-19
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Other IL (1)
Major groove platform with extra pair (H) (1)
Basepair signature: cWW-cSH-R-cWW-cWW
Heat map statistics: Min 0.24 | Avg 0.44 | Max 0.78

Help

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corejmol.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__551705494331732__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__551705494331732__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://rna.bgsu.edu/rna3dhub/motif/view/IL_81168.2","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__551705494331732__","codePath":"https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"551705494331732","bgcolor":"white" }

setting document base to "https://rna.bgsu.edu/rna3dhub/motif/view/IL_81168.2"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__551705494331732__ ready

script 1 started

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

Script completed

Jmol script terminated

script 2 started

Script completed

Jmol script terminated

script 3 started

Script completed

Jmol script terminated

script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

Motif IL_81168.2 Version IL_81168.2 of this group appears in releases 3.3 to 3.11 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_81168.2 Version IL_81168.2 of this group appears in releases 3.3 to 3.11

Download

Csv

Json