Motif IL_81225.1 Version IL_81225.1 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4M6D_013 | 4M6D | 0.8038 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | ||
| 2 | IL_4M4O_004 | 4M4O | 0.7648 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW | ||
| 3 | IL_5B2P_002 | 5B2P | 0.2898 | 1 | Isolated non-canonical cWW pair | B | Guide RNA | C | 44 | U | 45 | C | 46 | * | G | 28 | U | 30 | G | 31 | cWW | cwW | cWW |
| 4 | IL_4R0D_002 | 4R0D | 0.0000 | 4 | A | Group II catalytic intron | G | 74 | A | 75 | C | 76 | * | G | 103 | U | 108 | C | 109 | cWW | cWW | cWW | |
| 5 | IL_5TBW_103 | 5TBW | 0.5210 | 0 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 2863 | A | 2864 | U | 2865 | * | G | 2824 | C | 2825 | U | 2826 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAG*CAC | 2 |
| CUC*GUUG | 1 |
| GAC*GAAGCUC | 1 |
| GAU*GCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 2 |
| U*UU | 1 |
| A*AAGCU | 1 |
| A*C | 1 |
- Annotations
-
- (3)
- Isolated non-canonical cWW pair (2)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.15 | Avg 0.54 | Max 0.99
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