RNA 3D Hub //

Motif IL_81237.1 Version IL_81237.1 of this group appears in releases 2.0 to 2.0

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 91-92-73-43-74-85-6
1 IL_4R0D_0174R0D0.32780Receptor of 11-nt loop-receptor motifAGroup II catalytic intronC532U533A534A535G536*U518A519U520G521ncWWntWHcSHcWW
2 IL_1KXK_0021KXK0.26740Receptor of 11-nt loop-receptor motifAai5g group II Self-splicing intronC15U16A17A18G19*U54A55U56G57cWWtWHcSHcWW
3 IL_1NBS_0081NBS0.28870Receptor of 11-nt loop-receptor motifB RNase P class BC146U147A148C149G150*U159A160U161G162cWWtWHncSHcWW
4 IL_1X8W_0071X8W0.20140ATetrahymena ribozyme RNAC223U224A225A226G227*U247A248U249G250cWWncWW
5 IL_4WZJ_0364WZJ0.16480YYYYU4 small nuclear RNA variant: Native sequence 85-145, of which nucleotides 97-104 are replaced with GAAA tetraloop and nucleotides 134-137 are replaced with GAAA tetraloop receptor.C56U57A58A59G60*U46A47U48G49cWWtWHcSHcWW
6 IL_3T4B_0023T4B0.00000Receptor of 11-nt loop-receptor motifAHCV IRES pseudoknot domain plus crystallization moduleC2U3A4A5G6*U17A18U19G20cWWtWHcSHcWWcWW
7 IL_1U6B_0031U6B0.21570Receptor of 11-nt loop-receptor motifB197-MERC61U62A63A64G65*U80A81U82G83cWWtWHcSHncWWcWW
8 IL_3J7P_1403J7P0.850605 LSU rRNAG4768G4769U4770C4771C4772*G4863U4864C4865C4866cWWncWBncwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUAAG*UAUG6
CUACG*UAUG1
GGUCC*GUCC1
Non-Watson-Crick part of the motif
SequenceCounts
UAA*AU6
UAC*AU1
GUC*UC1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Receptor of 11-nt loop-receptor motif (5)
  • (3)
    • Basepair signature
    cWW-R-tWH-cSH-cWW
    Heat map statistics
    Min 0.16 | Avg 0.38 | Max 0.99
    Help

    Coloring options:

    IL_4R0D_017:IL_4R0D_017 = 0IL_4R0D_017:IL_1KXK_002 = 0.2857IL_4R0D_017:IL_1NBS_008 = 0.2801IL_4R0D_017:IL_1X8W_007 = 0.3748IL_4R0D_017:IL_4WZJ_036 = 0.3594IL_4R0D_017:IL_3T4B_002 = 0.3278IL_4R0D_017:IL_1U6B_003 = 0.3873IL_4R0D_017:IL_3J7P_140 = 0.9644IL_1KXK_002:IL_4R0D_017 = 0.2857IL_1KXK_002:IL_1KXK_002 = 0IL_1KXK_002:IL_1NBS_008 = 0.1864IL_1KXK_002:IL_1X8W_007 = 0.291IL_1KXK_002:IL_4WZJ_036 = 0.2493IL_1KXK_002:IL_3T4B_002 = 0.2674IL_1KXK_002:IL_1U6B_003 = 0.2596IL_1KXK_002:IL_3J7P_140 = 0.9836IL_1NBS_008:IL_4R0D_017 = 0.2801IL_1NBS_008:IL_1KXK_002 = 0.1864IL_1NBS_008:IL_1NBS_008 = 0IL_1NBS_008:IL_1X8W_007 = 0.2631IL_1NBS_008:IL_4WZJ_036 = 0.2417IL_1NBS_008:IL_3T4B_002 = 0.2887IL_1NBS_008:IL_1U6B_003 = 0.3358IL_1NBS_008:IL_3J7P_140 = 0.9282IL_1X8W_007:IL_4R0D_017 = 0.3748IL_1X8W_007:IL_1KXK_002 = 0.291IL_1X8W_007:IL_1NBS_008 = 0.2631IL_1X8W_007:IL_1X8W_007 = 0IL_1X8W_007:IL_4WZJ_036 = 0.1942IL_1X8W_007:IL_3T4B_002 = 0.2014IL_1X8W_007:IL_1U6B_003 = 0.3174IL_1X8W_007:IL_3J7P_140 = 0.8071IL_4WZJ_036:IL_4R0D_017 = 0.3594IL_4WZJ_036:IL_1KXK_002 = 0.2493IL_4WZJ_036:IL_1NBS_008 = 0.2417IL_4WZJ_036:IL_1X8W_007 = 0.1942IL_4WZJ_036:IL_4WZJ_036 = 0IL_4WZJ_036:IL_3T4B_002 = 0.1648IL_4WZJ_036:IL_1U6B_003 = 0.2995IL_4WZJ_036:IL_3J7P_140 = 0.8438IL_3T4B_002:IL_4R0D_017 = 0.3278IL_3T4B_002:IL_1KXK_002 = 0.2674IL_3T4B_002:IL_1NBS_008 = 0.2887IL_3T4B_002:IL_1X8W_007 = 0.2014IL_3T4B_002:IL_4WZJ_036 = 0.1648IL_3T4B_002:IL_3T4B_002 = 0IL_3T4B_002:IL_1U6B_003 = 0.2157IL_3T4B_002:IL_3J7P_140 = 0.8506IL_1U6B_003:IL_4R0D_017 = 0.3873IL_1U6B_003:IL_1KXK_002 = 0.2596IL_1U6B_003:IL_1NBS_008 = 0.3358IL_1U6B_003:IL_1X8W_007 = 0.3174IL_1U6B_003:IL_4WZJ_036 = 0.2995IL_1U6B_003:IL_3T4B_002 = 0.2157IL_1U6B_003:IL_1U6B_003 = 0IL_1U6B_003:IL_3J7P_140 = 0.9873IL_3J7P_140:IL_4R0D_017 = 0.9644IL_3J7P_140:IL_1KXK_002 = 0.9836IL_3J7P_140:IL_1NBS_008 = 0.9282IL_3J7P_140:IL_1X8W_007 = 0.8071IL_3J7P_140:IL_4WZJ_036 = 0.8438IL_3J7P_140:IL_3T4B_002 = 0.8506IL_3J7P_140:IL_1U6B_003 = 0.9873IL_3J7P_140:IL_3J7P_140 = 0IL_4R0D_017IL_1KXK_002IL_1NBS_008IL_1X8W_007IL_4WZJ_036IL_3T4B_002IL_1U6B_003IL_3J7P_140Discrepancy0.000.200.400.600.80
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