Motif IL_81326.1 Version IL_81326.1 of this group appears in releases 3.2 to 3.43
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PMI_007 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41 | A | 42 | A | 44 | U | 45 | * | A | 75 | G | 76 | G | 77 | cWW | cWW | cWW | |||
| 2 | IL_4PMI_001 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||12_455 | A | 42||||12_455 | A | 44||||12_455 | U | 45||||12_455 | * | A | 75||||12_455 | G | 76||||12_455 | G | 77||||12_455 | cWW | cWW | cWW | |||
| 3 | IL_4PMI_011 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||6_445 | A | 42||||6_445 | A | 44||||6_445 | U | 45||||6_445 | * | A | 75||||6_445 | G | 76||||6_445 | G | 77||||6_445 | cWW | cWW | cWW | |||
| 4 | IL_4PMI_003 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||13_455 | A | 42||||13_455 | A | 44||||13_455 | U | 45||||13_455 | * | A | 75||||13_455 | G | 76||||13_455 | G | 77||||13_455 | cWW | cWW | cWW | |||
| 5 | IL_4PMI_009 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||24_444 | A | 42||||24_444 | A | 44||||24_444 | U | 45||||24_444 | * | A | 75||||24_444 | G | 76||||24_444 | G | 77||||24_444 | cWW | cWW | cWW | |||
| 6 | IL_4PMI_005 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||18_445 | A | 42||||18_445 | A | 44||||18_445 | U | 45||||18_445 | * | A | 75||||18_445 | G | 76||||18_445 | G | 77||||18_445 | cWW | cWW | cWW | |||
| 7 | IL_4WSM_372 | 4WSM | 0.7998 | 0 | 1K | tRNA | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | |||
| 8 | IL_4PHY_003 | 4PHY | 0.8581 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |||
| 9 | IL_4V9F_053 | 4V9F | 0.7869 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | |||
| 10 | IL_4P3T_002 | 4P3T | 0.8282 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | |||
| 11 | IL_4N0T_004 | 4N0T | 0.7507 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | ||
| 12 | IL_4QIK_001 | 4QIK | 0.9589 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | |||
| 13 | IL_2O3Y_002 | 2O3Y | 0.9068 | 2 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW | ||
| 14 | IL_2O3V_002 | 2O3V | 0.9386 | 2 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUAU*AGG | 6 |
| CGCU*AAAAG | 2 |
| GCCC*GGC | 1 |
| GAUC*GAAC | 1 |
| GACU*ACC | 1 |
| GAAG*CCC | 1 |
| GAUG*CCC | 1 |
| UGUG*CUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*G | 6 |
| GC*AAA | 2 |
| CC*G | 1 |
| AU*AA | 1 |
| AC*C | 1 |
| AA*C | 1 |
| AU*C | 1 |
| GU*U | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (12)
- Decoding loop related (2)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.61 | Max 0.96
Coloring options: