Motif IL_81442.1 Version IL_81442.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5IBB_340 | 5IBB | 0.8133 | 0 | Single base bend | 1L | G | 50 | C | 51 | * | G | 63 | U | 64 | C | 65 | cWW | cWW |
| 2 | IL_5J7L_267 | 5J7L | 0.5688 | 1 | Other IL | DA | A | 933 | U | 934 | * | A | 844 | A | 845||A | U | 847||A | cWW | cWW |
| 3 | IL_4R4V_005 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | C | 755 | A | 756 | * | U | 719 | A | 720 | G | 722 | cWW | cWW |
| 4 | IL_4R4V_011 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | C | 755||||7_556 | A | 756||||7_556 | * | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | cWW | cWW |
| 5 | IL_4V5O_099 | 4V5O | 0.8946 | 3 | BA | U | 336 | G | 337 | * | U | 309 | C | 310 | A | 314 | cWW | ncWW | |
| 6 | IL_4LFB_012 | 4LFB | 0.9395 | 1 | A | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CA*UAAG | 2 |
| GC*GUC | 1 |
| AAUU*AU | 1 |
| UG*UCUCGA | 1 |
| AG*UAGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 2 |
| *U | 1 |
| AU* | 1 |
| *CUCG | 1 |
| *AG | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Intercalated cWS (2)
- Single base bend (1)
- Other IL (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.57 | Avg 0.64 | Max 0.95
Coloring options: