#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-53-4
1 IL_4LFB_0124LFB0.93951A SSU rRNAU249A250U252*A274G275cWWcWW
2 IL_5Y58_0015Y580.91481XTLC1U291A292A294*U308G309cWWcWW
3 IL_4V5O_0994V5O0.89463BA SSU rRNAU309C310A314*U336G337ncWWcWW
4 IL_4R4V_0114R4V0.00001Intercalated cWSAVS ribozyme RNAU719||||7_556A720||||7_556G722||||7_556*C755||||7_556A756||||7_556cWWcWW
5 IL_4R4V_0054R4V0.00001Intercalated cWSAVS ribozyme RNAU719A720G722*C755A756cWWcWW
6 IL_5J7L_2675J7L0.56881Other ILDA LSU rRNAA844A845||AU847||A*A933U934cWWcWW
7 IL_5IBB_3405IBB0.81330Single base bend1L tRNAG63U64C65*G50C51cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAAG*CA2
UAGU*AG1
UAUA*UG1
UCUCGA*UG1
AU*AAUU1
GUC*GC1
Non-Watson-Crick part of the motif
SequenceCounts
AA*2
AG*1
AU*1
CUCG*1
*AU1
U*1

Release history

Release3.33.43.53.63.73.83.93.103.11
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (3)
  • Intercalated cWS (2)
  • Single base bend (1)
  • Other IL (1)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.38 | Avg 0.65 | Max 0.95
    Help

    Coloring options:

    IL_4LFB_012:IL_4LFB_012 = 0IL_4LFB_012:IL_5Y58_001 = 0.3767IL_4LFB_012:IL_4V5O_099 = 0.7344IL_4LFB_012:IL_4R4V_011 = 0.9395IL_4LFB_012:IL_4R4V_005 = 0.9395IL_4LFB_012:IL_5J7L_267 = 0.8256IL_4LFB_012:IL_5IBB_340 = 0.9482IL_5Y58_001:IL_4LFB_012 = 0.3767IL_5Y58_001:IL_5Y58_001 = 0IL_5Y58_001:IL_4V5O_099 = 0.5293IL_5Y58_001:IL_4R4V_011 = 0.9148IL_5Y58_001:IL_4R4V_005 = 0.9148IL_5Y58_001:IL_5J7L_267 = 0.7726IL_5Y58_001:IL_5IBB_340 = 0.8743IL_4V5O_099:IL_4LFB_012 = 0.7344IL_4V5O_099:IL_5Y58_001 = 0.5293IL_4V5O_099:IL_4V5O_099 = 0IL_4V5O_099:IL_4R4V_011 = 0.8946IL_4V5O_099:IL_4R4V_005 = 0.8946IL_4V5O_099:IL_5J7L_267 = 0.8667IL_4V5O_099:IL_5IBB_340 = 0.9216IL_4R4V_011:IL_4LFB_012 = 0.9395IL_4R4V_011:IL_5Y58_001 = 0.9148IL_4R4V_011:IL_4V5O_099 = 0.8946IL_4R4V_011:IL_4R4V_011 = 0IL_4R4V_011:IL_4R4V_005 = 0IL_4R4V_011:IL_5J7L_267 = 0.5688IL_4R4V_011:IL_5IBB_340 = 0.8133IL_4R4V_005:IL_4LFB_012 = 0.9395IL_4R4V_005:IL_5Y58_001 = 0.9148IL_4R4V_005:IL_4V5O_099 = 0.8946IL_4R4V_005:IL_4R4V_011 = 0IL_4R4V_005:IL_4R4V_005 = 0IL_4R4V_005:IL_5J7L_267 = 0.5688IL_4R4V_005:IL_5IBB_340 = 0.8133IL_5J7L_267:IL_4LFB_012 = 0.8256IL_5J7L_267:IL_5Y58_001 = 0.7726IL_5J7L_267:IL_4V5O_099 = 0.8667IL_5J7L_267:IL_4R4V_011 = 0.5688IL_5J7L_267:IL_4R4V_005 = 0.5688IL_5J7L_267:IL_5J7L_267 = 0IL_5J7L_267:IL_5IBB_340 = 0.7309IL_5IBB_340:IL_4LFB_012 = 0.9482IL_5IBB_340:IL_5Y58_001 = 0.8743IL_5IBB_340:IL_4V5O_099 = 0.9216IL_5IBB_340:IL_4R4V_011 = 0.8133IL_5IBB_340:IL_4R4V_005 = 0.8133IL_5IBB_340:IL_5J7L_267 = 0.7309IL_5IBB_340:IL_5IBB_340 = 0IL_4LFB_012IL_5Y58_001IL_4V5O_099IL_4R4V_011IL_4R4V_005IL_5J7L_267IL_5IBB_340Discrepancy0.000.200.400.600.80
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