Motif IL_81442.2 Version IL_81442.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_012 | 4LFB | 0.9395 | 1 | A | SSU rRNA | U | 249 | A | 250 | U | 252 | * | A | 274 | G | 275 | cWW | cWW | |
| 2 | IL_5Y58_001 | 5Y58 | 0.9148 | 1 | X | TLC1 | U | 291 | A | 292 | A | 294 | * | U | 308 | G | 309 | cWW | cWW | |
| 3 | IL_4V5O_099 | 4V5O | 0.8946 | 3 | BA | SSU rRNA | U | 309 | C | 310 | A | 314 | * | U | 336 | G | 337 | ncWW | cWW | |
| 4 | IL_4R4V_011 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | * | C | 755||||7_556 | A | 756||||7_556 | cWW | cWW |
| 5 | IL_4R4V_005 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719 | A | 720 | G | 722 | * | C | 755 | A | 756 | cWW | cWW |
| 6 | IL_5J7L_267 | 5J7L | 0.5688 | 1 | 90 degree turn | DA | LSU rRNA | A | 844 | A | 845||A | U | 847||A | * | A | 933 | U | 934 | cWW | cWW |
| 7 | IL_5IBB_340 | 5IBB | 0.8133 | 0 | Single base bend | 1L | tRNA | G | 63 | U | 64 | C | 65 | * | G | 50 | C | 51 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CA | 2 |
| UAGU*AG | 1 |
| UAUA*UG | 1 |
| UCUCGA*UG | 1 |
| AU*AAUU | 1 |
| GUC*GC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 2 |
| AG* | 1 |
| AU* | 1 |
| CUCG* | 1 |
| *AU | 1 |
| U* | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Intercalated cWS (2)
- Single base bend (1)
- 90 degree turn (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.38 | Avg 0.65 | Max 0.95
Coloring options: