Motif IL_81791.1 Version IL_81791.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-3 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_024 | 4CUV | 0.0000 | 2 | 1 | 25S RRNA | G | 517 | G | 518 | A | 521 | A | 522 | A | 523 | U | 524 | C | 525 | * | G | 567 | G | 568 | A | 569 | A | 570 | U | 571 | A | 572 | C | 573 | cWW | tHW | tHW | tHW | ncBW | ncWW | ||
| 2 | IL_4W21_122 | 4W21 | 0.7911 | 2 | 5 | 28S ribosomal RNA | U | 4558 | A | 4559 | C | 4561 | C | 4562 | U | 4563 | A | 4564 | C | 4565 | * | G | 3895 | C | 3896 | G | 3897 | G | 3898 | G | 3899 | G | 3900 | A | 3902 | cWW | cSH | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAAUC*GGAAUAC | 1 |
| UACCCUAC*GCGGGGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAU*GAAUA | 1 |
| ACCCUA*CGGGGA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_81791.1 | Only in the parent motif |
|---|---|---|---|
| IL_92957.1 Compare | IL_4CUV_024 | IL_4W21_122 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-L-L-cWW
- Heat map statistics
- Min 0.79 | Avg 0.40 | Max 0.79
Coloring options: