Motif IL_82426.2 Version IL_82426.2 of this group appears in releases 3.3 to 3.44
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 3-11 | 5-6 | 7-11 | 8-13 | 9-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5OB3_003 | 5OB3 | 0.0703 | 2 | A | RNA aptamer (69-MER) | C | 18 | G | 19 | G | 20 | G | 21 | U | 22 | * | A | 45 | G | 46 | U | 47 | G | 49 | A | 50 | G | 51 | G | 53 | U | 54 | G | 55 | cWW | cWH | cWH | cWW | cHW | ntSW | cHW | |
| 2 | IL_4TS2_006 | 4TS2 | 0.0000 | 2 | Part of G-quadruplex | X+Y | Spinach aptamer RNA, bimolecular construct | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | * | A | 64 | G | 65 | U | 66 | G | 68 | A | 69 | G | 70 | G | 72 | U | 73 | G | 74 | cWW | cWH | cWH | cWW | cHW | ntSW | cHW |
| 3 | IL_4KZD_005 | 4KZD | 0.1173 | 2 | Part of G-quadruplex | R | RNA (84-MER) | C | 25 | G | 26 | G | 27 | G | 28 | U | 29 | * | A | 53 | G | 54 | U | 55 | G | 57 | A | 58 | G | 59 | G | 61 | U | 62 | G | 63 | cWW | cWH | cWH | cWW | cHW | cHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGU*AGUAGAGUGUG | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGG*GUAGAGUGU | 3 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Part of G-quadruplex (2)
- (1)
- Basepair signature
- cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.12
Coloring options: