Motif IL_82426.3 Version IL_82426.3 of this group appears in releases 3.45 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-12 | 3-11 | 5-6 | 7-11 | 8-13 | 9-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KZD_005 | 4KZD | 0.0000 | 2 | Part of G-quadruplex | R | RNA (84-MER) | C | 25 | G | 26 | G | 27 | G | 28 | U | 29 | * | A | 53 | G | 54 | U | 55 | G | 57 | A | 58 | G | 59 | G | 61 | U | 62 | G | 63 | cWW | cWH | cWH | cWW | cHW | cHW | |
| 2 | IL_4TS2_006 | 4TS2 | 0.1173 | 2 | Part of G-quadruplex | X+Y | Spinach aptamer RNA, bimolecular construct | C | 28 | G | 29 | G | 30 | G | 31 | U | 32 | * | A | 64 | G | 65 | U | 66 | G | 68 | A | 69 | G | 70 | G | 72 | U | 73 | G | 74 | cWW | cWH | cWH | cWW | cHW | ntSW | cHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGGU*AGUAGAGUGUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGG*GUAGAGUGU | 2 |
Release history
| Release | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Part of G-quadruplex (2)
- Basepair signature
- cWW-tSW-cWH-cHW-cWH-L-cHW-R-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: