Motif IL_82426.5 Version IL_82426.5 of this group appears in releases 3.93 to 3.93

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	break		9		10		11		12		13	1-13	2-5	3-7	4-6	5-11	6-10	8-9
1	IL_7L0Z_003	7L0Z	0.0463	3	Part of G-quadruplex	G	RNA (69-MER)	A	45	G	46	U	47	G	49	G	51	G	53	U	54	G	55	*	C	18	G	19	G	20	G	21	U	22	cWW	cHW		cHW	cHW	cHW	cWW
2	IL_8K7W_003	8K7W	0.0000	3		A	RNA (49-MER)	A	34	G	35	U	36	G	38	G	40	G	42	U	43	G	44	*	C	9	G	10	G	11	G	12	U	13	cWW	cHW	ntSW	cHW	cHW	cHW	cWW
3	IL_4TS2_006	4TS2	0.0660	3	Part of G-quadruplex	Y+X	Spinach aptamer RNA, bimolecular construct	A	64	G	65	U	66	G	68	G	70	G	72	U	73	G	74	*	C	28	G	29	G	30	G	31	U	32	cWW	cHW	ntSW	cHW	cHW	cHW	cWW
4	IL_4KZD_005	4KZD	0.1312	3	Part of G-quadruplex	R	RNA (84-MER)	A	53	G	54	U	55	G	57	G	59	G	61	U	62	G	63	*	C	25	G	26	G	27	G	28	U	29	cWW	cHW		cHW	cHW	cHW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AGUAGAGUGUG*CGGGU	4

Non-Watson-Crick part of the motif

Sequence	Counts
GUAGAGUGU*GGG	4

Release history

Release	3.93
Date	2025-01-29
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Part of G-quadruplex (3)
(1)
Basepair signature: cWW-cHW-R-L-cHW-cHW-cHW-cWW-L
Heat map statistics: Min 0.05 | Avg 0.07 | Max 0.13

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Coloring options: Nucleotide numbers

Motif IL_82426.5 Version IL_82426.5 of this group appears in releases 3.93 to 3.93 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_82426.5 Version IL_82426.5 of this group appears in releases 3.93 to 3.93

Download

Csv

Json