Motif IL_82787.1 Version IL_82787.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3OXE_004 | 3OXE | 0.0000 | 1 | UAA/GAN with extra stack | A | domain II of glycine riboswitch | G | 38 | C | 39 | A | 40 | A | 41 | G | 42 | * | U | 61 | G | 62 | A | 63 | A | 64 | C | 66 | cWW | tWH | tHS | cWW | |
| 2 | IL_4V9F_052 | 4V9F | 0.9627 | 2 | UAA/GAN | 0 | LSU rRNA | C | 1456 | U | 1457 | A | 1458 | A | 1459 | G | 1460 | * | C | 1483 | G | 1484 | A | 1485 | A | 1487 | G | 1489 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAG*UGAAAC | 1 |
| CUAAG*CGAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAA*GAAA | 1 |
| UAA*GAAAU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN with extra stack (1)
- UAA/GAN (1)
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: