Motif IL_83121.1 Version IL_83121.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 1-2 | 1-5 | 2-3 | 3-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1XJR_004 | 1XJR | 0.7491 | 1 | 180 degree turn | A | s2m RNA | G | 19 | C | 20 | * | G | 28 | A | 29 | C | 31 | ncsS | cWW | cWW | ncsS |
| 2 | IL_4LFB_012 | 4LFB | 0.0000 | 1 | A | SSU rRNA | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW | |||
| 3 | IL_5Y58_001 | 5Y58 | 0.3767 | 1 | X | TLC1 | U | 308 | G | 309 | * | U | 291 | A | 292 | A | 294 | cWW | cWW | |||
| 4 | IL_5J7L_015 | 5J7L | 0.6361 | 1 | AA | SSU rRNA | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAGU | 2 |
| GC*GAUC | 1 |
| UG*UAUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 2 |
| *AG | 2 |
- Annotations
-
- (3)
- 180 degree turn (1)
- Basepair signature
- cWW-cSS-R-cWW
- Heat map statistics
- Min 0.38 | Avg 0.54 | Max 0.97
Coloring options: