Motif IL_83162.2 Version IL_83162.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_354 | 5J7L | 0.0759 | 0 | tHS double platform | DA | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | tSH | tHH | cWW | |
| 2 | IL_4Y4O_285 | 4Y4O | 0.0000 | 0 | tHS double platform (H) | 2A | LSU rRNA | U | 2847 | G | 2848 | U | 2849 | A | 2850 | A | 2851 | G | 2852 | * | U | 2865 | U | 2866 | G | 2867 | A | 2868 | G | 2869 | cWW | ntSH | tHH | cWW | |
| 3 | IL_4WF9_108 | 4WF9 | 0.2470 | 0 | tHS double platform | X | LSU rRNA | U | 2867 | G | 2868 | G | 2869 | A | 2870 | A | 2871 | G | 2872 | * | U | 2885 | G | 2886 | G | 2887 | A | 2888 | G | 2889 | cWW | ntSH | tSS | tHH | cWW |
| 4 | IL_4V9F_099 | 4V9F | 0.6160 | 0 | tHS double platform | 0 | LSU rRNA | U | 2864 | G | 2865 | U | 2866 | G | 2867 | C | 2868 | G | 2869 | * | U | 2888 | U | 2889 | A | 2890 | A | 2891 | G | 2892 | cWW | tSH | tHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGUAAG*UUGAG | 2 |
| UGGAAG*UGGAG | 1 |
| UGUGCG*UUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*UGA | 2 |
| GGAA*GGA | 1 |
| GUGC*UAA | 1 |
- Annotations
-
- tHS double platform (3)
- tHS double platform (H) (1)
- Basepair signature
- cWW-tSH-L-R-L-tHH-cWW
- Heat map statistics
- Min 0.08 | Avg 0.29 | Max 0.63
Coloring options: