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Motif IL_83162.5 Version IL_83162.5 of this group appears in releases 3.80 to 3.86

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 101-102-93-85-86-7
1 IL_5J7L_3545J7L0.07371tHS double platformDA LSU rRNAU2847G2848U2849A2850A2851G2852*U2865U2866A2868G2869cWWtSHtHHcWW
2 IL_7RQB_1107RQB0.00001tHS double platform1A LSU rRNAU2847G2848U2849A2850A2851G2852*U2865U2866A2868G2869cWWtSHntHHcWW
3 IL_4WF9_1084WF90.23311tHS double platformX LSU rRNAU2867G2868G2869A2870A2871G2872*U2885G2886A2888G2889cWWntSHtSStHHcWW
4 IL_5TBW_1335TBW0.356311 LSU rRNAU3332G3333U3334A3335A3336G3337*C3367U3368A3370G3371cWWntSHntHHcWW
5 IL_8C3A_1398C3A0.352211 LSU rRNAU3297G3298U3299A3300A3301G3302*C3332U3333A3335G3336cWWtSHtHHcWW
6 IL_7A0S_1017A0S0.37531X LSU rRNAU2822G2823C2824A2825C2826G2827*U2840U2841A2843G2844cWWntSHtHHcWW
7 IL_4V9F_0994V9F0.38461tHS double platform0 LSU rRNAU2864G2865U2866G2867C2868G2869*U2888U2889A2891G2892cWWtSHtHHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAAG*UUGAG2
UGUAAG*CUGAG2
UGGAAG*UGGAG1
UGCACG*UUCAG1
UGUGCG*UUAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA*UGA4
GGAA*GGA1
GCAC*UCA1
GUGC*UAA1

Release history

Release3.803.813.823.833.843.853.86
Date2024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-17
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tHS double platform (4)
  • (3)
    • Basepair signature
    cWW-tSH-L-tHH-L-cWW
    Heat map statistics
    Min 0.07 | Avg 0.20 | Max 0.41
    Help

    Coloring options:

    IL_5J7L_354:IL_5J7L_354 = 0IL_5J7L_354:IL_7RQB_110 = 0.0737IL_5J7L_354:IL_4WF9_108 = 0.2468IL_5J7L_354:IL_5TBW_133 = 0.2842IL_5J7L_354:IL_8C3A_139 = 0.367IL_5J7L_354:IL_7A0S_101 = 0.3847IL_5J7L_354:IL_4V9F_099 = 0.4075IL_7RQB_110:IL_5J7L_354 = 0.0737IL_7RQB_110:IL_7RQB_110 = 0IL_7RQB_110:IL_4WF9_108 = 0.2331IL_7RQB_110:IL_5TBW_133 = 0.3563IL_7RQB_110:IL_8C3A_139 = 0.3522IL_7RQB_110:IL_7A0S_101 = 0.3753IL_7RQB_110:IL_4V9F_099 = 0.3846IL_4WF9_108:IL_5J7L_354 = 0.2468IL_4WF9_108:IL_7RQB_110 = 0.2331IL_4WF9_108:IL_4WF9_108 = 0IL_4WF9_108:IL_5TBW_133 = 0.2018IL_4WF9_108:IL_8C3A_139 = 0.2214IL_4WF9_108:IL_7A0S_101 = 0.2071IL_4WF9_108:IL_4V9F_099 = 0.2068IL_5TBW_133:IL_5J7L_354 = 0.2842IL_5TBW_133:IL_7RQB_110 = 0.3563IL_5TBW_133:IL_4WF9_108 = 0.2018IL_5TBW_133:IL_5TBW_133 = 0IL_5TBW_133:IL_8C3A_139 = 0.0813IL_5TBW_133:IL_7A0S_101 = 0.1151IL_5TBW_133:IL_4V9F_099 = 0.114IL_8C3A_139:IL_5J7L_354 = 0.367IL_8C3A_139:IL_7RQB_110 = 0.3522IL_8C3A_139:IL_4WF9_108 = 0.2214IL_8C3A_139:IL_5TBW_133 = 0.0813IL_8C3A_139:IL_8C3A_139 = 0IL_8C3A_139:IL_7A0S_101 = 0.1031IL_8C3A_139:IL_4V9F_099 = 0.1177IL_7A0S_101:IL_5J7L_354 = 0.3847IL_7A0S_101:IL_7RQB_110 = 0.3753IL_7A0S_101:IL_4WF9_108 = 0.2071IL_7A0S_101:IL_5TBW_133 = 0.1151IL_7A0S_101:IL_8C3A_139 = 0.1031IL_7A0S_101:IL_7A0S_101 = 0IL_7A0S_101:IL_4V9F_099 = 0.0964IL_4V9F_099:IL_5J7L_354 = 0.4075IL_4V9F_099:IL_7RQB_110 = 0.3846IL_4V9F_099:IL_4WF9_108 = 0.2068IL_4V9F_099:IL_5TBW_133 = 0.114IL_4V9F_099:IL_8C3A_139 = 0.1177IL_4V9F_099:IL_7A0S_101 = 0.0964IL_4V9F_099:IL_4V9F_099 = 0IL_5J7L_354IL_7RQB_110IL_4WF9_108IL_5TBW_133IL_8C3A_139IL_7A0S_101IL_4V9F_099Discrepancy0.000.100.200.300.40
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