Motif IL_83675.1 Version IL_83675.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-4 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V8P_243 | 4V8P | 0.0000 | 3 | Kink-turn related (H) | D1 | LSU rRNA | U | 2152 | G | 2153 | A | 2154 | G | 2156 | G | 2157 | * | U | 2168 | G | 2169 | U | 2171 | G | 2172 | A | 2173 | A | 2175 | ncSs | cWW | tSS | tWW | tWW | cWW |
| 2 | IL_5TBW_083 | 5TBW | 0.1233 | 3 | Kink-turn related | 1 | LSU rRNA | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | * | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | cWW | tSS | tWW | tWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGACGG*UGAUGACA | 1 |
| CGAUGG*UGUUGACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACG*GAUGAC | 1 |
| GAUG*GUUGAC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn related (H) (1)
- Kink-turn related (1)
- Basepair signature
- cWW-R-tSS-tWW-tWW-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: