Motif IL_84345.1 Version IL_84345.1 of this group appears in releases 3.91 to 3.91
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5ZTM_001 | 5ZTM | 0.4278 | 0 | Isolated non-canonical cWW pair | C | non-coding mRNA sequence roX2 | U | 118 | A | 119 | G | 120 | * | C | 162 | C | 163 | G | 164 | cWW | ncWW | cWW |
| 2 | IL_9DFE_029 | 9DFE | 0.3824 | 0 | 1A | LSU rRNA | U | 905 | G | 906 | U | 907 | * | A | 870 | U | 871 | A | 872 | cWW | cWS | cWW | |
| 3 | IL_8P9A_285 | 8P9A | 0.1927 | 1 | AR | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW | |
| 4 | IL_4V9F_046 | 4V9F | 0.1662 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 5 | IL_7A0S_041 | 7A0S | 0.1269 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 6 | IL_4WF9_044 | 4WF9 | 0.0000 | 1 | Isolated cWS basepair | X | LSU rRNA | C | 1235 | G | 1236 | U | 1237 | * | A | 1285 | U | 1287 | G | 1288 | cWW | cWS | cWW |
| 7 | IL_9DFE_044 | 9DFE | 0.0841 | 1 | 1A | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW | |
| 8 | IL_5J7L_286 | 5J7L | 0.1003 | 1 | Isolated cWS basepair | DA | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 9 | IL_5E81_401 | 5E81 | 0.3837 | 0 | 3L | tRNA | C | 67 | G | 68 | A | 69 | * | U | 4 | C | 5 | G | 6 | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 5 |
| UAG*CCG | 1 |
| UGU*AUA | 1 |
| CGC*GACG | 1 |
| CGA*UCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 5 |
| A*C | 1 |
| G*U | 1 |
| G*AC | 1 |
| G*C | 1 |
Release history
| Release | 3.91 |
|---|---|
| Date | 2024-12-04 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated cWS basepair (4)
- (4)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.27 | Max 0.51
Coloring options: