Motif IL_85881.1 Version IL_85881.1 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3IGI_005 | 3IGI | 0.6331 | 2 | Multiple bulged bases | A | Group IIC intron | G | 128 | G | 129 | * | U | 234 | G | 236 | U | 238 | cWW | cWW | |
| 2 | IL_4V5O_106 | 4V5O | 0.0000 | 0 | BA | SSU rRNA | G | 477 | G | 478 | * | U | 493 | A | 494 | C | 495 | cWW | ncWW | ntSH | |
| 3 | IL_4IOA_094 | 4IOA | 0.7999 | 0 | Single bulged A (H) | X | LSU rRNA | C | 2570 | G | 2571 | * | C | 2580 | A | 2581 | G | 2582 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GG*UUGAU | 1 |
| GG*UAC | 1 |
| CG*CAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *A | 2 |
| *UGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Multiple bulged bases (1)
- Single bulged A (H) (1)
- (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.63 | Avg 0.53 | Max 0.95
Coloring options: