Motif IL_86040.1 Version IL_86040.1 of this group appears in releases 3.48 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 3-4 | 3-5 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4YAZ_005 | 4YAZ | 0.0000 | 1 | R | Cyclic di-GMP-I riboswitch | A | 4 | A | 6 | C | 7 | * | G | 77 | A | 78 | A | 79 | A | 80 | U | 81 | cWW | cWW | ntSH | cSW | cSH |
| 2 | IL_5J7L_013 | 5J7L | 0.7877 | 0 | AA | SSU rRNA | G | 212 | G | 213 | C | 214 | * | G | 203 | G | 204 | A | 205 | C | 206 | C | 207 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACAC*GAAAU | 1 |
| GGC*GGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CA*AAA | 1 |
| G*GAC | 1 |
Release history
| Release | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-cSW-cSH-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: