Motif IL_86578.1 Version IL_86578.1 of this group appears in releases 3.12 to 3.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4IOA_023 | 4IOA | 0.0000 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW | |
| 2 | IL_4J39_001 | 4J39 | 0.6957 | 1 | Isolated non-canonical cWW pair | B | RNA (19-mer) | G | 9 | C | 11 | * | G | 9||||4_555 | C | 10||||4_555 | C | 11||||4_555 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*UUA | 1 |
| GCC*GCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *U | 1 |
| C*C | 1 |
- Annotations
-
- (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.70 | Avg 0.35 | Max 0.70
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