Motif IL_87332.1 Version IL_87332.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-6 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6ZDU_001 | 6ZDU | 0.5145 | 0 | C | Chains: C,D | C | 1268 | U | 1269 | U | 1270 | * | A | 1283 | U | 1284 | A | 1285 | G | 1286 | cWW | ncWW | |||||
| 2 | IL_4N0T_004 | 4N0T | 0.3102 | 0 | B | U6 snRNA | C | 66 | C | 67 | C | 68 | * | G | 78 | A | 79 | U | 80 | G | 81 | ncWW | cWW | cWW | cWW | |||
| 3 | IL_4P3T_002 | 4P3T | 0.0000 | 0 | A+B | RNA (23-mer) | C | 7 | C | 8 | C | 9 | * | G | 39 | A | 40 | A | 41 | G | 42 | cWW | ncWW | cWW | ||||
| 4 | IL_4V9F_053 | 4V9F | 0.1837 | 0 | 0 | LSU rRNA | A | 1465 | C | 1466 | C | 1467 | * | G | 1475 | A | 1476 | C | 1477 | U | 1478 | cWW | cWB | cWW | ||||
| 5 | IL_7RQB_031 | 7RQB | 0.3377 | 0 | Minor groove platform with extra cWW | 1A | LSU rRNA | G | 875 | C | 876 | U | 877 | * | A | 899 | A | 900 | A | 901 | C | 902 | cWW | ncWW | cWW | tSH | ||
| 6 | IL_4V88_411 | 4V88 | 0.4341 | 0 | Minor groove platform with extra cWW | A6 | SSU rRNA | G | 516 | U | 517 | A | 518 | * | U | 533 | A | 534 | A | 535 | C | 536 | cWW | ncWW | cWW | tSH | ||
| 7 | IL_5J7L_006 | 5J7L | 0.5616 | 0 | Minor groove platform with extra cWW | AA | SSU rRNA | C | 67 | G | 68 | G | 69 | * | C | 99 | G | 100 | A | 101 | G | 102 | cWW | cWW | cWW | tSH | ||
| 8 | IL_4WF9_003 | 4WF9 | 0.7269 | 0 | Minor groove platform with extra cWW | X | LSU rRNA | G | 42 | A | 43 | A | 44 | * | U | 480 | C | 481 | U | 482 | C | 483 | cWW | cWW | cSH | |||
| 9 | IL_3MXH_001 | 3MXH | 0.8188 | 1 | Minor groove platform with extra cWW | R | c-di-GMP riboswitch | C | 11 | A | 12 | C | 13 | * | G | 94 | A | 95 | G | 97 | G | 98 | cWW | cWW | cWW | |||
| 10 | IL_5B2P_002 | 5B2P | 0.8595 | 0 | Isolated non-canonical cWW pair | B | Guide RNA | C | 44 | U | 45 | C | 46 | * | G | 28 | U | 29 | U | 30 | G | 31 | cWW | cwW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUU*AUAG | 1 |
| CCC*GAUG | 1 |
| CCC*GAAG | 1 |
| ACC*GACU | 1 |
| GCU*AAAC | 1 |
| GUA*UAAC | 1 |
| CGG*CGAG | 1 |
| GAA*UCUC | 1 |
| CAC*GAUGG | 1 |
| CUC*GUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*AA | 2 |
| U*UA | 1 |
| C*AU | 1 |
| C*AC | 1 |
| U*AA | 1 |
| G*GA | 1 |
| A*CU | 1 |
| A*AUG | 1 |
| U*UU | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform with extra cWW (5)
- (4)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-cWW-R-cWW
- Heat map statistics
- Min 0.18 | Avg 0.59 | Max 0.98
Coloring options: