Motif IL_87406.1 Version IL_87406.1 of this group appears in releases 3.27 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | 3-5 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CK5_002 | 6CK5 | 0.0000 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | A | 43 | C | 44 | cWW | cWW | cSH | cSH | tHS | cWW |
| 2 | IL_6DLR_002 | 6DLR | 0.2721 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 42 | U | 43 | C | 44 | cWW | cWB | ncSH | cSH | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUUC*GAC | 1 |
| GGUUC*GUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUU*A | 1 |
| GUU*U | 1 |
Release history
| Release | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 8-nt loop receptor (2)
- Basepair signature
- cWW-cWW-cSH-cSH-tHS-cWW
- Heat map statistics
- Min 0.27 | Avg 0.14 | Max 0.27
Coloring options: