Motif IL_87406.2 Version IL_87406.2 of this group appears in releases 3.37 to 3.45

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8	1-8	2-7	3-4	3-5	4-7	5-6
1	IL_6CK5_002	6CK5	0.2721	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	42	A	43	C	44	cWW	cWW	cSH	cSH	tHS	cWW
2	IL_6DLR_002	6DLR	0.0000	8-nt loop receptor	A	Guanidine-I riboswitch	G	16	G	17	U	18	U	19	C	20	*	G	42	U	43	C	44	cWW	cWB	ncSH	cSH	ncWw	cWW
3	IL_4IOA_061	4IOA	0.7505		X	LSU rRNA	G	1503	G	1504	U	1505	C	1506	A	1507	*	U	1515	A	1516	C	1517	cWW	cWW		ncWH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUUC*GAC	1
GGUUC*GUC	1
GGUCA*UAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUU*A	1
GUU*U	1
GUC*A	1

Release history

Release	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45
Date	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 8-nt loop receptor (2)
(1)
Basepair signature: cWW-cWW-cSH-cSH-cWW
Heat map statistics: Min 0.27 | Avg 0.40 | Max 0.76

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Coloring options: Nucleotide numbers

Motif IL_87406.2 Version IL_87406.2 of this group appears in releases 3.37 to 3.45 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_87406.2 Version IL_87406.2 of this group appears in releases 3.37 to 3.45

Download

Csv

Json