Motif IL_87720.3 Version IL_87720.3 of this group appears in releases 4.10 to 4.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_009 | 5UNE | 0.2169 | 0 | Isolated non-canonical cWW contact | A+B | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWW | |
| 2 | IL_5UNE_001 | 5UNE | 0.1912 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWw | cWW |
| 3 | IL_1SI3_001 | 1SI3 | 0.0849 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 4 | IL_1SI2_002 | 1SI2 | 0.0000 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 5 | IL_7LYF_002 | 7LYF | 0.2070 | 0 | Isolated non-canonical cWW pair | A | Dengue virus SLA | C | 84 | A | 85 | A | 86 | * | U | 46 | G | 47 | G | 48 | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGG*UGA | 2 |
| UGA*UGA | 2 |
| CAA*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 4 |
| A*G | 1 |
- Annotations
-
- Isolated non-canonical cWW contact (4)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.08 | Avg 0.16 | Max 0.26
Coloring options: