Motif IL_87880.1 Version IL_87880.1 of this group appears in releases 3.58 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4ERD_003 | 4ERD | 0.9380 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW | |
| 2 | IL_4V88_395 | 4V88 | 0.0000 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 3 | IL_3R1D_012 | 3R1D | 0.8294 | 0 | E | RNA (11-mer) | C | 5||||2_655 | G | 6||A||2_655 | G | 7||A||2_655 | * | C | 5 | G | 6||A | G | 7||A | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGA*UCGAC | 1 |
| UGU*AGA | 1 |
| CGG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 2 |
| G*CGA | 1 |
- Annotations
-
- (2)
- Isolated non-canonical cWW contact (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.83 | Avg 0.61 | Max 0.97
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