Motif IL_87880.2 Version IL_87880.2 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_395 | 4V88 | 0.3079 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW | |
| 2 | IL_5C5W_002 | 5C5W | 0.0000 | 0 | Isolated non-canonical cWW pair | A | RNA (19-mer) | U | 9||A | C | 10||A | A | 11||A | * | U | 9||A||5_556 | C | 10||A||5_556 | A | 11||A||5_556 | cWW | cWW | |
| 3 | IL_4ERD_003 | 4ERD | 0.9161 | 2 | C+D | RNA (22-mer) | G | 146 | G | 147 | A | 148 | * | U | 119 | C | 120 | C | 123 | cWW | ntSs | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGU*AGA | 1 |
| UCA*UCA | 1 |
| GGA*UCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*G | 1 |
| C*C | 1 |
| G*CGA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Isolated non-canonical cWW contact (1)
- Isolated non-canonical cWW pair (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.31 | Avg 0.48 | Max 0.94
Coloring options: