Motif IL_88116.1 Version IL_88116.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_316 | 8P9A | 0.0000 | 0 | AR | LSU rRNA | U | 2211 | C | 2212 | A | 2213 | A | 2214 | A | 2215 | G | 2216 | U | 2217 | * | A | 2228 | A | 2229 | C | 2230 | C | 2231 | A | 2232 | A | 2233 | G | 2234 | cWW | tSH | cWW | cWW |
| 2 | IL_4V9F_069 | 4V9F | 0.2508 | 0 | 0 | LSU rRNA | U | 1907 | G | 1908 | A | 1909 | A | 1910 | C | 1911 | A | 1912 | C | 1913 | * | G | 1926 | A | 1927 | C | 1928 | G | 1929 | A | 1930 | A | 1931 | G | 1932 | cWW | tSH | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCAAAGU*AACCAAG | 1 |
| UGAACAC*GACGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAG*ACCAA | 1 |
| GAACA*ACGAA | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Heat map statistics
- Min 0.25 | Avg 0.13 | Max 0.25
Coloring options: