Motif IL_88269.1 Version IL_88269.1 of this group appears in releases 3.2 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-7 | 5-6 | 8-9 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_018 | 4LFB | 0.0000 | 0 | 6x5 Sarcin-Ricin; G-bulge | A | SSU rRNA | G | 446 | G | 447 | A | 448 | C | 449 | G | 450 | * | C | 483 | G | 484 | G | 485 | U | 486 | A | 487 | C | 488 | cWW | tSH | tHW | cWW | cSH | |
| 2 | IL_5J7L_309 | 5J7L | 0.4858 | 1 | 6x5 Sarcin-Ricin; G-bulge | DA | LSU rRNA | U | 1742 | G | 1743 | A | 1744 | A | 1745 | A | 1746 | * | U | 1712 | A | 1713 | G | 1715 | U | 1716 | A | 1717 | G | 1718 | cWW | tSH | tHW | tWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACG*CGGUAC | 1 |
| UGAAA*UAUGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAC*GGUA | 1 |
| GAA*AUGUA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 6x5 Sarcin-Ricin; G-bulge (2)
- Basepair signature
- cWW-tSH-tHW-cSH-tWW-cWW
- Heat map statistics
- Min 0.49 | Avg 0.24 | Max 0.49
Coloring options: