Motif IL_88269.2 Version IL_88269.2 of this group appears in releases 3.18 to 3.76

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10		11	1-11	2-10	3-9	4-7	5-6	8-9
1	IL_6CZR_130	6CZR	0.1510	0	6x5 Sarcin-Ricin; G-bulge	1a	SSU rRNA	G	441	G	442	A	443	C	444	G	445	*	C	468	G	469	G	470	U	471	A	472	C	473	cWW	tSH	tHW		cWW	ncSH
2	IL_4LFB_018	4LFB	0.0000	0	6x5 Sarcin-Ricin; G-bulge	A	SSU rRNA	G	446	G	447	A	448	C	449	G	450	*	C	483	G	484	G	485	U	486	A	487	C	488	cWW	tSH	tHW		cWW	cSH
3	IL_5J7L_309	5J7L	0.4858	1	6x5 Sarcin-Ricin; G-bulge	DA	LSU rRNA	U	1742	G	1743	A	1744	A	1745	A	1746	*	U	1712	A	1713	G	1715	U	1716	A	1717	G	1718	cWW	tSH	tHW	tWW	cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GGACG*CGGUAC	2
UGAAA*UAUGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAC*GGUA	2
GAA*AUGUA	1

Release history

Release	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47	3.48	3.49	3.50	3.51	3.52	3.53	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: 6x5 Sarcin-Ricin; G-bulge (3)
Basepair signature: cWW-tSH-tHW-L-cSH-R-cWW
Heat map statistics: Min 0.15 | Avg 0.25 | Max 0.51

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