Motif IL_90106.1 Version IL_90106.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_299 | 5J7L | 0.2808 | 1 | DA | LSU rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW |
| 2 | IL_4Y4O_222 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | tHH | tHS | cWW |
| 3 | IL_4Y4O_203 | 4Y4O | 0.8088 | 1 | 2A | LSU rRNA | C | 846 | G | 848 | A | 849 | C | 850 | * | G | 927 | G | 928 | U | 930 | G | 931 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*UGAUG | 1 |
| UAAG*CGAUG | 1 |
| CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*GAU | 2 |
| UGA*GU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tHH-tHS-cWW
- Heat map statistics
- Min 0.28 | Avg 0.44 | Max 0.88
Coloring options: