Motif IL_92103.1 Version IL_92103.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_083 | 4V9F | 0.3752 | 0 | Major groove platform | 0 | LSU rRNA | U | 2528 | G | 2529 | * | U | 2492 | C | 2493 | G | 2494 | cWW | cWW | cHH |
| 2 | IL_4V9F_086 | 4V9F | 0.0000 | 0 | Major groove platform | 0 | LSU rRNA | C | 2542 | G | 2543 | * | U | 2615 | G | 2616 | G | 2617 | cWW | cWW | nchH |
| 3 | IL_4Y4O_271 | 4Y4O | 0.0971 | 0 | Major groove platform (H) | 2A | LSU rRNA | C | 2507 | G | 2508 | * | U | 2580 | G | 2581 | G | 2582 | cWW | cWW | chH |
| 4 | IL_4WF9_094 | 4WF9 | 0.1069 | 0 | Major groove platform | X | LSU rRNA | C | 2534 | G | 2535 | * | U | 2607 | G | 2608 | G | 2609 | cWW | cWW | chH |
| 5 | IL_4WF9_106 | 4WF9 | 0.5553 | 0 | Major groove intercalation | X | LSU rRNA | G | 2858 | G | 2859 | * | U | 2898 | A | 2899 | C | 2900 | cWW | cWW | |
| 6 | IL_4Y4O_245 | 4Y4O | 0.7151 | 1 | Major groove intercalation (H) | 2A | LSU rRNA | U | 1841 | G | 1842 | * | U | 1898 | G | 1899 | A | 1901 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*UGG | 3 |
| UG*UCG | 1 |
| GG*UAC | 1 |
| UG*UGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *G | 3 |
| *C | 1 |
| *A | 1 |
| *GA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Major groove platform (3)
- Major groove intercalation (1)
- Major groove intercalation (H) (1)
- Major groove platform (H) (1)
- Basepair signature
- cWW-cHH-cWW
- Heat map statistics
- Min 0.10 | Avg 0.40 | Max 0.77
Coloring options: