Motif IL_92114.1 Version IL_92114.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 3-4 | 4-8 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2Y9B_009 | 2Y9B | 0.1864 | 0 | Y | HOMO SAPIENS U4A SNRNA | C | 856 | U | 857 | A | 858 | A | 859 | G | 860 | * | U | 846 | A | 847 | U | 848 | G | 849 | cWW | tWH | ncSH | cWW | ||
| 2 | IL_1NBS_008 | 1NBS | 0.0000 | 0 | Receptor of 11-nt loop-receptor motif | B | RNase P class B | C | 146 | U | 147 | A | 148 | C | 149 | G | 150 | * | U | 159 | A | 160 | U | 161 | G | 162 | cWW | tWH | ncSH | cWW | |
| 3 | IL_3G78_014 | 3G78 | 0.2631 | 0 | A | Group II catalytic intron D1-D4-3 | C | 346 | U | 347 | A | 348 | A | 349 | G | 350 | * | U | 332 | A | 333 | U | 334 | G | 335 | cWW | tWH | cSH | ncWW | cWW | |
| 4 | IL_1U6B_003 | 1U6B | 0.2699 | 0 | Receptor of 11-nt loop-receptor motif | B | 197-MER | C | 61 | U | 62 | A | 63 | A | 64 | G | 65 | * | U | 80 | A | 81 | U | 82 | G | 83 | cWW | tWH | cSH | ncWW | cWW |
| 5 | IL_1X8W_007 | 1X8W | 0.2887 | 0 | A | Tetrahymena ribozyme RNA | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | ncWW | ||||
| 6 | IL_2Y9B_003 | 2Y9B | 0.3073 | 0 | V | HOMO SAPIENS U4A SNRNA | C | 856 | U | 857 | A | 858 | A | 859 | G | 860 | * | U | 846 | A | 847 | U | 848 | G | 849 | cWW | tWH | ncSH | cWW | ||
| 7 | IL_1GID_007 | 1GID | 0.3086 | 0 | A | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | tWH | cSH | ncWW | cWW | |
| 8 | IL_1GID_014 | 1GID | 0.3358 | 0 | B | P4-P6 RNA RIBOZYME DOMAIN | C | 223 | U | 224 | A | 225 | A | 226 | G | 227 | * | U | 247 | A | 248 | U | 249 | G | 250 | cWW | tWH | cSH | ncWW | cWW | |
| 9 | IL_3T4B_002 | 3T4B | 0.3981 | 0 | Receptor of 11-nt loop-receptor motif | A | HCV IRES pseudoknot domain plus crystallization module | C | 2 | U | 3 | A | 4 | A | 5 | G | 6 | * | U | 17 | A | 18 | U | 19 | G | 20 | cWW | tWH | cSH | cWW | cWW |
| 10 | IL_1KXK_002 | 1KXK | 0.4286 | 0 | Receptor of 11-nt loop-receptor motif | A | ai5g group II Self-splicing intron | C | 15 | U | 16 | A | 17 | A | 18 | G | 19 | * | U | 54 | A | 55 | U | 56 | G | 57 | cWW | tWH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 9 |
| CUACG*UAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 9 |
| UAC*AU | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92114.1 | Only in the parent motif |
|---|---|---|---|
| IL_82768.2 Compare | IL_1U6B_003, IL_1KXK_002, IL_1NBS_008, IL_1GID_007, IL_3G78_014, IL_1GID_014 | IL_3T4B_002, IL_2Y9B_009, IL_2Y9B_003, IL_1X8W_007 | |
| IL_67617.1 Compare | IL_1X8W_007 | IL_1U6B_003, IL_1KXK_002, IL_1NBS_008, IL_1GID_007, IL_3G78_014, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002, IL_2Y9B_009 | IL_3KTW_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_92114.1 | Only in the child motif |
|---|---|---|---|
| IL_92114.2 Compare | IL_1U6B_003, IL_1KXK_002, IL_1X8W_007, IL_1NBS_008, IL_1GID_007, IL_3G78_014, IL_2Y9B_003, IL_1GID_014, IL_3T4B_002 | IL_2Y9B_009 |
- Annotations
-
- (6)
- Receptor of 11-nt loop-receptor motif (4)
- Basepair signature
- 09_cWW-tWH-cSH--cWW
- Heat map statistics
- Min 0.01 | Avg 0.24 | Max 0.43
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