Motif IL_92205.2 Version IL_92205.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_020 | 3J7A | 0.9497 | 0 | Isolated near basepair (H) | A | SSU rRNA | C | 417 | A | 418 | U | 419 | * | A | 426 | A | 427 | G | 428 | cWW | cWW | |
| 2 | IL_2GDI_001 | 2GDI | 0.0000 | 1 | X | TPP riboswitch | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW | |
| 3 | IL_2GDI_005 | 2GDI | 0.0459 | 1 | Y | TPP riboswitch | A | 45 | A | 47 | C | 48 | * | G | 18 | G | 19 | U | 20 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAC*GGU | 2 |
| CAU*AAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*G | 2 |
| A*A | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92205.2 | Only in the parent motif |
|---|---|---|---|
| IL_92205.1 Compare | IL_2GDI_005, IL_2GDI_001 | IL_3J7A_020 | |
| IL_24955.1 Compare | IL_3J7A_020 | IL_2GDI_005, IL_2GDI_001 | IL_4BPP_063, IL_4J5V_004 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Isolated near basepair (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.43 | Max 0.95
Coloring options: