Motif IL_24955.1 Version IL_24955.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4BPP_063 | 4BPP | 0.7128 | 0 | A | SSU rRNA | U | 1221 | U | 1222 | U | 1223 | * | A | 1206 | C | 1207 | A | 1208 | cWW | ntSH | cWW | |
| 2 | IL_4J5V_004 | 4J5V | 0.0000 | 0 | B | RNA (19-mer) | G | 209 | C | 210 | C | 211 | * | G | 209||||4_555 | C | 210||||4_555 | C | 211||||4_555 | cWW | cWW | ||
| 3 | IL_3J7A_020 | 3J7A | 0.6703 | 0 | Isolated non-canonical cWW pair (H) | A | SSU rRNA | C | 417 | A | 418 | U | 419 | * | A | 426 | A | 427 | G | 428 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUU*ACA | 1 |
| GCC*GCC | 1 |
| CAU*AAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*C | 1 |
| C*C | 1 |
| A*A | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_24955.1 | Only in the parent motif |
|---|---|---|---|
| IL_22658.1 Compare | IL_4BPP_063 | IL_3J7A_020, IL_4J5V_004 | IL_4M4O_004, IL_4M6D_013, IL_1LNG_001 |
| IL_63133.1 Compare | IL_4J5V_004 | IL_3J7A_020, IL_4BPP_063 |
Children motifs
| Child motif | Common motif instances | Only in IL_24955.1 | Only in the child motif |
|---|---|---|---|
| IL_24955.2 Compare | IL_4BPP_063, IL_4J5V_004 | IL_3J7A_020 | |
| IL_92205.2 Compare | IL_3J7A_020 | IL_4BPP_063, IL_4J5V_004 | IL_2GDI_005, IL_2GDI_001 |
- Annotations
-
- (2)
- Isolated non-canonical cWW pair (H) (1)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.67 | Avg 0.52 | Max 0.94
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