#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 5 61-62-53-4
1 IL_4BPP_0634BPP0.71280A18S RRNAU1221U1222U1223*A1206C1207A1208cWWntSHcWW
2 IL_4J5V_0044J5V0.00000BRNA (19-mer)G209C210C211*G209||||4_555C210||||4_555C211||||4_555cWWcWW
3 IL_3J7A_0203J7A0.67030Isolated near basepair (H)A SSU rRNAC417A418U419*A426A427G428cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UUU*ACA1
GCC*GCC1
CAU*AAG1
Non-Watson-Crick part of the motif
SequenceCounts
U*C1
C*C1
A*A1

Release history

Release1.17
Date2014-09-04
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_24955.1Only in the child motif
IL_24955.2
Compare
IL_4BPP_063, IL_4J5V_004IL_3J7A_020
IL_92205.2
Compare
IL_3J7A_020IL_4BPP_063, IL_4J5V_004IL_2GDI_005, IL_2GDI_001
Annotations
  • (2)
  • Isolated near basepair (H) (1)
  • Basepair signature
    cWW-L-R-cWW
    Heat map statistics
    Min 0.67 | Avg 0.52 | Max 0.94
    Help

    Coloring options:

    IL_4BPP_063:IL_4BPP_063 = 0IL_4BPP_063:IL_4J5V_004 = 0.7128IL_4BPP_063:IL_3J7A_020 = 0.9426IL_4J5V_004:IL_4BPP_063 = 0.7128IL_4J5V_004:IL_4J5V_004 = 0IL_4J5V_004:IL_3J7A_020 = 0.6703IL_3J7A_020:IL_4BPP_063 = 0.9426IL_3J7A_020:IL_4J5V_004 = 0.6703IL_3J7A_020:IL_3J7A_020 = 0IL_4BPP_063IL_4J5V_004IL_3J7A_020Discrepancy0.000.200.400.600.80
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