Motif IL_92333.1 Version IL_92333.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3UXR_011 | 3UXR | 0.2109 | 1 | A | 23S ribosomal RNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW | |
| 2 | IL_2ZJR_054 | 2ZJR | 0.1995 | 1 | tSH-tHW (H) | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
| 3 | IL_3UXR_054 | 3UXR | 0.0000 | 1 | A | 23S ribosomal RNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW | |
| 4 | IL_1LNG_002 | 1LNG | 0.1752 | 3 | B | SRP S RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUAG*CGAAU | 1 |
| CUAU*AAACG | 1 |
| CUAG*CGAAG | 1 |
| GUAG*CGAACCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| UA*AAC | 1 |
| UA*GAACC | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_92333.1 | Only in the parent motif |
|---|---|---|---|
| IL_81468.1 Compare | IL_2ZJR_054, IL_1LNG_002 | IL_3UXR_011, IL_3UXR_054 | IL_3PYO_053, IL_3PYO_010 |
Children motifs
| Child motif | Common motif instances | Only in IL_92333.1 | Only in the child motif |
|---|---|---|---|
| IL_21333.1 Compare | IL_2ZJR_054, IL_1LNG_002 | IL_3UXR_011, IL_3UXR_054 | IL_3V2F_054, IL_3V2F_011 |
- Annotations
-
- (3)
- tSH-tHW (H) (1)
- Basepair signature
- 08_cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.18 | Avg 0.17 | Max 0.27
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