Motif IL_93830.1 Version IL_93830.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_031 | 4WF9 | 0.0000 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | X | LSU rRNA | G | 901 | A | 902 | G | 903 | G | 904 | U | 905 | A | 906 | G | 907 | * | C | 960 | G | 961 | A | 962 | A | 963 | U | 964 | G | 965 | C | 966 | cWW | cWW | ncWB | cSH | tWH | tHS | cWW |
| 2 | IL_5J7L_270 | 5J7L | 0.1226 | 0 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | DA | LSU rRNA | G | 856 | G | 857 | G | 858 | G | 859 | U | 860 | A | 861 | G | 862 | * | C | 915 | G | 916 | A | 917 | A | 918 | U | 919 | A | 920 | C | 921 | cWW | cWW | cWB | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGGUAG*CGAAUGC | 1 |
| GGGGUAG*CGAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUA*GAAUG | 1 |
| GGGUA*GAAUA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- 7x7 Sarcin-Ricin with intercalated A; G-bulge (2)
- Basepair signature
- cWW-cWW-bif-R-cSH-tWH-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: