Motif IL_94181.1 Version IL_94181.1 of this group appears in releases 3.12 to 3.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LCK_008 | 4LCK | 0.9093 | 1 | Other IL | F | T-box leader | G | 28 | A | 29 | U | 31 | * | A | 77 | C | 78 | cWW | cWW |
| 2 | IL_5IBB_340 | 5IBB | 0.8133 | 0 | Single base bend | 1L | tRNA | G | 63 | U | 64 | C | 65 | * | G | 50 | C | 51 | cWW | cWW |
| 3 | IL_5TBW_101 | 5TBW | 0.8297 | 1 | Single stack bend | 1 | LSU rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW |
| 4 | IL_5J7L_267 | 5J7L | 0.5688 | 1 | 90 degree turn | DA | LSU rRNA | A | 844 | A | 845||A | U | 847||A | * | A | 933 | U | 934 | cWW | cWW |
| 5 | IL_4R4V_005 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719 | A | 720 | G | 722 | * | C | 755 | A | 756 | cWW | cWW |
| 6 | IL_4R4V_011 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | * | C | 755||||7_556 | A | 756||||7_556 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CA | 2 |
| GAUU*AC | 1 |
| GUC*GC | 1 |
| GUCC*GC | 1 |
| AU*AAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 2 |
| AU* | 1 |
| U* | 1 |
| UC* | 1 |
| *AU | 1 |
- Annotations
-
- Intercalated cWS (2)
- Other IL (1)
- Single base bend (1)
- 90 degree turn (1)
- Single stack bend (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.38 | Avg 0.57 | Max 0.91
Coloring options: