Motif IL_94181.1 Version IL_94181.1 of this group appears in releases 3.12 to 3.17

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_4LCK_008	4LCK	0.9093	1	Other IL	F	T-box leader	G	28	A	29	U	31	*	A	77	C	78	cWW	cWW
2	IL_5IBB_340	5IBB	0.8133	0	Single base bend	1L	tRNA	G	63	U	64	C	65	*	G	50	C	51	cWW	cWW
3	IL_5TBW_101	5TBW	0.8297	1	Single stack bend with bulge	1	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	cWW	cWW
4	IL_5J7L_267	5J7L	0.5688	1	Other IL	DA	LSU rRNA	A	844	A	845\|\|A	U	847\|\|A	*	A	933	U	934	cWW	cWW
5	IL_4R4V_005	4R4V	0.0000	1	Intercalated cWS	A	VS ribozyme RNA	U	719	A	720	G	722	*	C	755	A	756	cWW	cWW
6	IL_4R4V_011	4R4V	0.0000	1	Intercalated cWS	A	VS ribozyme RNA	U	719\|\|\|\|7_556	A	720\|\|\|\|7_556	G	722\|\|\|\|7_556	*	C	755\|\|\|\|7_556	A	756\|\|\|\|7_556	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAG*CA	2
GAUU*AC	1
GUC*GC	1
GUCC*GC	1
AU*AAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	2
AU*	1
U*	1
UC*	1
*AU	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05
Status	New id, > 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Other IL (2)
Intercalated cWS (2)
Single base bend (1)
Single stack bend with bulge (1)
Basepair signature: cWW-L-cWW
Heat map statistics: Min 0.38 | Avg 0.57 | Max 0.91

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Coloring options: Nucleotide numbers

Motif IL_94181.1 Version IL_94181.1 of this group appears in releases 3.12 to 3.17 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_94181.1 Version IL_94181.1 of this group appears in releases 3.12 to 3.17

Download

Csv

Json