#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_3J9M_0813J9M0.71170AA SSU rRNAC1020U1021A1022*U1029G1030cWWcWW
2 IL_4R4V_0114R4V0.00001Intercalated cWSAVS ribozyme RNAU719||||7_556A720||||7_556G722||||7_556*C755||||7_556A756||||7_556cWWcWW
3 IL_4R4V_0054R4V0.00001Intercalated cWSAVS ribozyme RNAU719A720G722*C755A756cWWcWW
4 IL_3R1D_0123R1D0.88221ERNA (11-mer)C5||||2_655G6||A||2_655G7||A||2_655*C5G7||AcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAAG*CA2
CUA*UG1
CGG*CGG1
Non-Watson-Crick part of the motif
SequenceCounts
AA*2
U*1
G*G1

Release history

Release2.0
Date2017-04-24
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Intercalated cWS (2)
  • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.71 | Avg 0.51 | Max 0.92
    Help

    Coloring options:

    IL_3J9M_081:IL_3J9M_081 = 0IL_3J9M_081:IL_4R4V_011 = 0.7117IL_3J9M_081:IL_4R4V_005 = 0.7117IL_3J9M_081:IL_3R1D_012 = 0.9194IL_4R4V_011:IL_3J9M_081 = 0.7117IL_4R4V_011:IL_4R4V_011 = 0IL_4R4V_011:IL_4R4V_005 = 0IL_4R4V_011:IL_3R1D_012 = 0.8822IL_4R4V_005:IL_3J9M_081 = 0.7117IL_4R4V_005:IL_4R4V_011 = 0IL_4R4V_005:IL_4R4V_005 = 0IL_4R4V_005:IL_3R1D_012 = 0.8822IL_3R1D_012:IL_3J9M_081 = 0.9194IL_3R1D_012:IL_4R4V_011 = 0.8822IL_3R1D_012:IL_4R4V_005 = 0.8822IL_3R1D_012:IL_3R1D_012 = 0IL_3J9M_081IL_4R4V_011IL_4R4V_005IL_3R1D_012Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 1.0001 s
    Application loaded.