Motif IL_94575.1 Version IL_94575.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J9M_081 | 3J9M | 0.7117 | 0 | AA | SSU rRNA | C | 1020 | U | 1021 | A | 1022 | * | U | 1029 | G | 1030 | cWW | cWW | |
| 2 | IL_4R4V_011 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719||||7_556 | A | 720||||7_556 | G | 722||||7_556 | * | C | 755||||7_556 | A | 756||||7_556 | cWW | cWW |
| 3 | IL_4R4V_005 | 4R4V | 0.0000 | 1 | Intercalated cWS | A | VS ribozyme RNA | U | 719 | A | 720 | G | 722 | * | C | 755 | A | 756 | cWW | cWW |
| 4 | IL_3R1D_012 | 3R1D | 0.8822 | 1 | E | RNA (11-mer) | C | 5||||2_655 | G | 6||A||2_655 | G | 7||A||2_655 | * | C | 5 | G | 7||A | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAAG*CA | 2 |
| CUA*UG | 1 |
| CGG*CGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA* | 2 |
| U* | 1 |
| G*G | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Intercalated cWS (2)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.71 | Avg 0.51 | Max 0.92
Coloring options: