Motif IL_96332.4 Version IL_96332.4 of this group appears in releases 3.94 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8K85_012 | 8K85 | 0.0710 | 1 | B+A | RNA (56-MER) | G | 4 | A | 5 | C | 6 | G | 7 | G | 8 | C | 10 | * | G | 50 | G | 51 | G | 52 | C | 53 | cWW | cWW | cWW | ||
| 2 | IL_8K85_001 | 8K85 | 0.0000 | 1 | A+B | RNA (56-MER) | G | 4 | A | 5 | C | 6 | G | 7 | G | 8 | C | 10 | * | G | 50 | G | 51 | G | 52 | C | 53 | cWW | cWW | cWW | ||
| 3 | IL_8K7W_001 | 8K7W | 0.0938 | 1 | A | RNA (49-MER) | G | 3 | A | 4 | C | 5 | G | 6 | G | 7 | C | 9 | * | G | 44 | G | 45 | G | 46 | C | 47 | cWW | cWW | cWW | ||
| 4 | IL_4KZD_004 | 4KZD | 0.2071 | 1 | Tandem non-canonical cWW pairs | R | RNA (84-MER) | G | 19 | A | 20 | A | 21 | G | 22 | G | 23 | C | 25 | * | G | 63 | A | 64 | G | 65 | C | 66 | cWW | cWW | cWW | |
| 5 | IL_4TS2_005 | 4TS2 | 0.1724 | 1 | Tandem non-canonical cWW pairs | X+Y | Spinach aptamer RNA, bimolecular construct | G | 22 | A | 23 | A | 24 | G | 25 | G | 26 | C | 28 | * | G | 74 | A | 75 | G | 76 | C | 77 | cWW | cWW | ncwW | cWW |
| 6 | IL_7L0Z_002 | 7L0Z | 0.2209 | 1 | G | RNA (69-MER) | G | 12 | A | 13 | G | 14 | G | 15 | G | 16 | C | 18 | * | G | 55 | G | 56 | G | 57 | C | 58 | cWW | cWW | ncWB | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACGGUC*GGGC | 3 |
| GAAGGAC*GAGC | 2 |
| GAGGGUC*GGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGGU*GG | 3 |
| AAGGA*AG | 2 |
| AGGGU*GG | 1 |
Release history
| Release | 3.94 |
|---|---|
| Date | 2025-02-26 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Tandem non-canonical cWW pairs (2)
- Basepair signature
- cWW-cWW-L-R-L-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.15 | Max 0.25
Coloring options: