Motif IL_97601.2 Version IL_97601.2 of this group appears in releases 3.3 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-4 | 2-7 | 3-4 | 3-5 | 3-6 | 3-7 | 4-7 | 5-6 | 5-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2XXA_002 | 2XXA | 0.8429 | 0 | Other IL | F | SSRP RNA | C | 89 | C | 90 | U | 91 | U | 92 | C | 93 | * | G | 10 | U | 11 | G | 12 | cWW | ncWW | ncSH | ncWW | ntHW | cWW | ncWW | |||
| 2 | IL_5T83_002 | 5T83 | 0.8655 | 0 | 8-nt loop receptor | A | Guanidine-I riboswitch | G | 16 | G | 17 | U | 18 | U | 19 | C | 20 | * | G | 39 | U | 40 | C | 41 | cWW | ncSH | cSH | cSH | ncWW | cWW | ||||
| 3 | IL_5U3G_002 | 5U3G | 0.8472 | 0 | 8-nt loop receptor | B | Guanidine-I riboswitch | G | 10 | G | 11 | U | 12 | U | 13 | C | 14 | * | G | 27 | U | 28 | C | 29 | cWW | ncSH | cSH | cSH | ncWW | ncWW | cWW | |||
| 4 | IL_4R0D_017 | 4R0D | 0.2181 | 1 | Receptor of 11-nt loop-receptor motif | A | Group II catalytic intron | C | 532 | U | 533 | A | 534 | A | 535 | G | 536 | * | U | 518 | A | 519 | G | 521 | cWW | ntWH | cSH | cWW | ||||||
| 5 | IL_3Q1Q_009 | 3Q1Q | 0.1790 | 1 | Receptor of 11-nt loop-receptor motif | C | TRNA (PHE) | C | 44 | U | 45 | A | 46 | A | 47 | G | 48 | * | U | 32 | A | 33 | G | 35 | cWW | tWH | cSH | cWW | ||||||
| 6 | IL_5BTM_002 | 5BTM | 0.0000 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (55-mer) | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW | ||||||
| 7 | IL_4K27_004 | 4K27 | 0.0508 | 1 | Receptor of 11-nt loop-receptor motif | U | Myotonic Dystrophy Type 2 RNA | C | 19 | U | 20 | A | 21 | A | 22 | G | 23 | * | U | 34 | A | 35 | G | 37 | cWW | tWH | cSH | cWW | ||||||
| 8 | IL_5XTM_001 | 5XTM | 0.0704 | 1 | Receptor of 11-nt loop-receptor motif | B | RNA (47-MER) | C | 41 | U | 42 | A | 43 | A | 44 | G | 45 | * | U | 3 | A | 4 | G | 6 | cWW | tWH | cSH | cWW | ||||||
| 9 | IL_5M0H_003 | 5M0H | 0.0928 | 1 | Receptor of 11-nt loop-receptor motif | A | ASH1 E3 (42 nt-TL/TLR) | C | 14 | U | 15 | A | 16 | A | 17 | G | 18 | * | U | 29 | A | 30 | G | 32 | cWW | tWH | cSH | cWW | ||||||
| 10 | IL_6AZ4_002 | 6AZ4 | 0.1156 | 1 | Receptor of 11-nt loop-receptor motif | A | RNA (32-MER) | C | 13 | U | 14 | A | 15 | A | 16 | G | 17 | * | U | 28 | A | 29 | G | 31 | cWW | tWH | cSH | cWW | ||||||
| 11 | IL_5Y7M_005 | 5Y7M | 0.1129 | 1 | Receptor of 11-nt loop-receptor motif | D | RNA (52-MER) | C | 46 | U | 47 | A | 48 | A | 49 | G | 50 | * | U | 3 | A | 4 | G | 6 | cWW | ntWH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UAUG | 8 |
| GGUUC*GUC | 2 |
| CCUUC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*AU | 8 |
| GUU*U | 2 |
| CUU*U | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Receptor of 11-nt loop-receptor motif (8)
- 8-nt loop receptor (2)
- Other IL (1)
- Basepair signature
- cWW-tWH-cSH-cWW
- Heat map statistics
- Min 0.05 | Avg 0.41 | Max 0.88
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