IL_5U3G_002

3D structure

PDB id

5U3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GGUUC*GUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_22373.1

Basepair signature

cWW-L-R-cSH-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5U3G|1|B|G|10
5U3G|1|B|G|11
5U3G|1|B|U|12
5U3G|1|B|U|13
5U3G|1|B|C|14
*
5U3G|1|B|G|27
5U3G|1|B|U|28
5U3G|1|B|C|29

Current chains

Chain B

ykkC riboswitch

Nearby chains