Motif IL_99460.1 Version IL_99460.1 of this group appears in releases 3.93 to 3.95
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_125 | 6CZR | 0.1296 | 0 | C-loop | 1a | SSU rRNA | U | 300 | G | 301 | G | 302 | C | 303 | C | 304 | * | G | 288 | G | 289 | cWW | cWW |
| 2 | IL_4LFB_013 | 4LFB | 0.0000 | 0 | C-loop | A | SSU rRNA | U | 304 | G | 305 | G | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
| 3 | IL_5J7L_016 | 5J7L | 0.1676 | 0 | C-loop | AA | SSU rRNA | U | 304 | G | 305 | A | 306 | C | 307 | C | 308 | * | G | 292 | G | 293 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGCC*GG | 2 |
| UGACC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGC* | 2 |
| GAC* | 1 |
- Annotations
-
- C-loop (3)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.13 | Avg 0.11 | Max 0.19
Coloring options: