Motif J3_08040.1 Version J3_08040.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 1-29 | 2-12 | 3-11 | 5-24 | 6-20 | 8-9 | 10-19 | 11-25 | 12-18 | 13-17 | 15-29 | 16-26 | 16-29 | 18-27 | 21-22 | |||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7KVT_002 | 7KVT | 0.0000 | 1 | B | C | 10 | A | 12 | G | 13 | G | 14 | U | 15 | G | 16 | A | 17 | G | 18 | * | U | 38 | U | 39 | A | 40 | G | 41 | G | 42 | A | 43 | U | 44 | A | 45 | G | 46 | G | 47 | A | 48 | A | 49 | G | 50 | * | C | 67 | U | 68 | A | 69 | A | 70 | G | 71 | C | 72 | G | 73 | G | 74 | cWW | csS | cSs | tWH | tSW | cWW | tWH | ncWw | tWH | tHW | ntHS | ncWH | ncsS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAGGUGAG*UUAGGAUAGGAAG*CUAAGCGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAGGUGA*UAGGAUAGGAA*UAAGCG | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-tWH-F-cSS-tWS-tWH-cSS-tHW-tHW-F-F-F-F-cWW-cWW-F-F-cWW-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: