Motif J3_10980.1 Version J3_10980.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 4-9 | 5-8 | 6-7 | 11-12 | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5TBW_066 | 5TBW | 0.1235 | 0 | 1 | LSU rRNA | G | 1796 | A | 1797 | A | 1798 | A | 1799 | A | 1800 | U | 1801 | * | A | 1654 | G | 1655 | A | 1656 | C | 1657 | G | 1658 | * | C | 1791 | C | 1792 | cWW | tHH | tHS | cWW | cWW |
2 | J3_8C3A_055 | 8C3A | 0.0000 | 0 | 1 | LSU rRNA | G | 1792 | A | 1793 | A | 1794 | A | 1795 | A | 1796 | U | 1797 | * | A | 1650 | G | 1651 | A | 1652 | C | 1653 | G | 1654 | * | U | 1787 | C | 1788 | cWW | tHH | tHS | cWW | cWW |
3 | J3_4V9F_017 | 4V9F | 0.1244 | 0 | 0 | LSU rRNA | G | 1655 | A | 1656 | A | 1657 | A | 1658 | A | 1659 | G | 1660 | * | U | 1531 | G | 1532 | A | 1533 | C | 1534 | G | 1535 | * | C | 1650 | C | 1651 | cWW | tHH | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGACG*CC*GAAAAU | 1 |
AGACG*UC*GAAAAU | 1 |
UGACG*CC*GAAAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAC**AAAA | 3 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-cWW
- Heat map statistics
- Min 0.12 | Avg 0.09 | Max 0.16
Coloring options: