Motif J3_11454.1 Version J3_11454.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9		10	break		11		12		13		14		15		16	break		17		18		19	1-19	7-14	8-12	10-11	16-17
1	J3_5J7L_070	5J7L	0.1678	3	DA	LSU rRNA	U	2384	C	2385	A	2386	U	2387	G	2389	G	2391	A	2392	U	2393	C	2394	C	2395	*	G	2421	C	2422	U	2423	C	2424	A	2425	C	2427	*	G	2282	C	2283	A	2284	cWW	tHW		cWW	cWW
2	J3_9DFE_015	9DFE	0.0000	3	1A	LSU rRNA	G	2384	C	2385	C	2386	U	2387	G	2389	G	2391	A	2392	A	2393	C	2394	C	2395	*	G	2421	A	2422	U	2423	C	2424	A	2425	C	2427	*	G	2282	C	2283	C	2284	cWW	tHW	tHW	cWW	cWW
3	J3_7A0S_020	7A0S	0.2005	3	X	LSU rRNA	G	2363	C	2364	U	2365	U	2366	G	2368	G	2370	A	2371	A	2372	C	2373	C	2374	*	G	2400	A	2401	U	2402	C	2403	A	2404	C	2406	*	G	2261	C	2262	C	2263	cWW		tHW	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GCAUCAUAGUGAUCCGCUCAAC	1
GCCGCCUAGUGAACCGAUCAAC	1
GCCGCUUAGUGAACCGAUCAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CCAUAGUGAUCCUCAA	1
CCCUAGUGAACAUCAA	1
CCUUAGUGAACAUCAA	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-F-F-F-cWW-F-F-F-F-tHW-F-tHW-F-cWW
Heat map statistics: Min 0.17 | Avg 0.13 | Max 0.22

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