Motif J3_11454.1 Version J3_11454.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 1-19 | 7-14 | 8-12 | 10-11 | 16-17 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5J7L_070 | 5J7L | 0.1678 | 3 | DA | LSU rRNA | U | 2384 | C | 2385 | A | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | U | 2393 | C | 2394 | C | 2395 | * | G | 2421 | C | 2422 | U | 2423 | C | 2424 | A | 2425 | C | 2427 | * | G | 2282 | C | 2283 | A | 2284 | cWW | tHW | cWW | cWW | |
| 2 | J3_9DFE_015 | 9DFE | 0.0000 | 3 | 1A | LSU rRNA | G | 2384 | C | 2385 | C | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | A | 2393 | C | 2394 | C | 2395 | * | G | 2421 | A | 2422 | U | 2423 | C | 2424 | A | 2425 | C | 2427 | * | G | 2282 | C | 2283 | C | 2284 | cWW | tHW | tHW | cWW | cWW |
| 3 | J3_7A0S_020 | 7A0S | 0.2005 | 3 | X | LSU rRNA | G | 2363 | C | 2364 | U | 2365 | U | 2366 | G | 2368 | G | 2370 | A | 2371 | A | 2372 | C | 2373 | C | 2374 | * | G | 2400 | A | 2401 | U | 2402 | C | 2403 | A | 2404 | C | 2406 | * | G | 2261 | C | 2262 | C | 2263 | cWW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCA*UCAUAGUGAUCC*GCUCAAC | 1 |
| GCC*GCCUAGUGAACC*GAUCAAC | 1 |
| GCC*GCUUAGUGAACC*GAUCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| C*CAUAGUGAUC*CUCAA | 1 |
| C*CCUAGUGAAC*AUCAA | 1 |
| C*CUUAGUGAAC*AUCAA | 1 |
- Annotations
-
- (3)
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-F-tHW-F-cWW
- Heat map statistics
- Min 0.17 | Avg 0.13 | Max 0.22
Coloring options: