Motif J3_24879.1 Version J3_24879.1 of this group appears in releases 3.88 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | break | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 1-28 | 2-3 | 4-8 | 4-24 | 5-9 | 6-21 | 8-23 | 9-19 | 9-24 | 10-25 | 10-27 | 11-17 | 12-17 | 13-16 | 14-15 | 18-25 | 19-23 | 20-24 | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4V9F_012 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | U | 27 | G | 28 | * | C | 480 | U | 481 | G | 482 | C | 483 | A | 484 | A | 485 | A | 486 | G | 487 | U | 488 | A | 489 | C | 490 | C | 491 | * | G | 501 | A | 502 | G | 503 | G | 504 | C | 505 | G | 506 | A | 507 | A | 508 | A | 509 | A | 511 | G | 512 | A | 513 | C | 515 | A | 516 | cWW | cWW | tWH | ncSs | tSH | tHH | tWW | csS | tWW | tSS | cWW | cSW | tHS | cWWa | cWW | cWB | ntWH | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *UGCAAAGUAC*AGGCGAAAUAGAGC | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: