Motif J3_27903.1 Version J3_27903.1 of this group appears in releases 3.88 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 1-18 | 6-14 | 7-13 | 8-12 | 10-11 | 15-16 | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5TBW_067 | 5TBW | 0.3229 | 3 | 1 | LSU rRNA | G | 2754 | C | 2755 | C | 2756 | U | 2757 | U | 2759 | G | 2761 | A | 2762 | U | 2763 | C | 2764 | C | 2765 | * | G | 2793 | G | 2794 | U | 2795 | G | 2796 | C | 2798 | * | G | 2651 | U | 2652 | C | 2653 | cWW | tHh | tHW | tHW | cWW | cWW |
| 2 | J3_8C3A_056 | 8C3A | 0.3080 | 3 | 1 | LSU rRNA | G | 2726 | C | 2727 | C | 2728 | U | 2729 | U | 2731 | G | 2733 | A | 2734 | U | 2735 | C | 2736 | C | 2737 | * | G | 2765 | G | 2766 | U | 2767 | G | 2768 | C | 2770 | * | G | 2623 | U | 2624 | C | 2625 | cWW | tHh | tHW | tHW | cWW | cWW |
| 3 | J3_7A0S_020 | 7A0S | 0.1829 | 4 | X | LSU rRNA | G | 2363 | C | 2364 | U | 2365 | U | 2366 | G | 2368 | G | 2370 | A | 2371 | A | 2372 | C | 2373 | C | 2374 | * | G | 2400 | A | 2401 | C | 2403 | A | 2404 | C | 2406 | * | G | 2261 | C | 2262 | C | 2263 | cWW | tHW | cWW | cWW | ||
| 4 | J3_8VTW_045 | 8VTW | 0.0000 | 4 | 1A | LSU rRNA | G | 2384 | C | 2385 | C | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | A | 2393 | C | 2394 | C | 2395 | * | G | 2421 | A | 2422 | C | 2424 | A | 2425 | C | 2427 | * | G | 2282 | C | 2283 | C | 2284 | cWW | tHW | tHW | cWW | cWW | |
| 5 | J3_5J7L_070 | 5J7L | 0.1486 | 4 | DA | LSU rRNA | U | 2384 | C | 2385 | A | 2386 | U | 2387 | G | 2389 | G | 2391 | A | 2392 | U | 2393 | C | 2394 | C | 2395 | * | G | 2421 | C | 2422 | C | 2424 | A | 2425 | C | 2427 | * | G | 2282 | C | 2283 | A | 2284 | cWW | tHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUC*GCCUAUCGAUCC*GGUGCC | 2 |
| GCC*GCUUAGUGAACC*GAUCAAC | 1 |
| GCC*GCCUAGUGAACC*GAUCAAC | 1 |
| GCA*UCAUAGUGAUCC*GCUCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CCUAUCGAUC*GUGC | 2 |
| C*CUUAGUGAAC*AUCAA | 1 |
| C*CCUAGUGAAC*AUCAA | 1 |
| C*CAUAGUGAUC*CUCAA | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Heat map statistics
- Min 0.08 | Avg 0.20 | Max 0.33
Coloring options: