Motif J3_34234.1 Version J3_34234.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 1-21 | 2-20 | 3-4 | 3-18 | 5-19 | 8-9 | 14-17 | 15-16 | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_8C3A_053 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | C | 1547 | G | 1548 | U | 1549 | U | 1550 | U | 1551 | A | 1553 | C | 1555 | G | 1556 | * | C | 1574 | A | 1575 | A | 1576 | C | 1577 | C | 1578 | A | 1579 | U | 1580 | * | A | 1533 | G | 1534 | A | 1535 | U | 1536 | G | 1537 | G | 1538 | cWW | tSH | cSH | tWH | ntWW | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGAUGG*CGUUUCAACG*CAACCAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAUG*GUUUCAAC*AACCA | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-tSH-cSH-tWH-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: