Motif J3_38098.1 Version J3_38098.1 of this group appears in releases 3.91 to 3.92
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | break | 20 | 21 | 22 | 23 | 24 | 25 | 1-25 | 2-24 | 3-4 | 3-22 | 4-7 | 5-23 | 8-14 | 9-14 | 10-13 | 11-12 | 18-21 | 19-20 | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8P9A_056 | 8P9A | 0.0000 | 2 | AR | LSU rRNA | C | 1551 | G | 1552 | U | 1553 | U | 1554 | U | 1555 | A | 1557 | A | 1559 | G | 1560 | G | 1561 | C | 1562 | C | 1563 | * | G | 1577 | C | 1578 | C | 1579 | A | 1580 | C | 1581 | C | 1582 | A | 1583 | U | 1584 | * | A | 1537 | G | 1538 | A | 1539 | U | 1540 | G | 1541 | G | 1542 | cWW | tSH | ncSH | tWH | ntWW | tWW | ncWW | ncWW | ncWw | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAUGG*CGUUUCAAAGGCC*GCCACCAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUG*GUUUCAAAGGC*CCACCA | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: