Motif J3_44816.1 Version J3_44816.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 1-19 | 2-8 | 3-18 | 6-18 | 8-16 | 9-10 | 12-13 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_7Q82_002 | 7Q82 | 0.0000 | 1 | C+A+B | RNA 3 | C | 35 | A | 37 | G | 38 | A | 39 | C | 40 | A | 41 | U | 42 | A | 43 | C | 44 | * | G | 6 | 1MA | 7 | G | 8 | * | C | 8 | U | 9 | G | 10 | A | 11 | C | 12 | C | 13 | G | 14 | cWW | tSW | cWW | ntWS | ncSW | cWW | cWW |
| 2 | J3_7V9E_002 | 7V9E | 0.1215 | 1 | A | RNA (68-MER) | C | 38 | A | 40 | G | 41 | A | 42 | C | 43 | A | 44 | U | 45 | A | 46 | C | 47 | * | G | 62 | 1MA | 63 | G | 64 | * | C | 6 | U | 7 | G | 8 | A | 9 | C | 10 | C | 11 | G | 12 | cWW | tSW | cWW | cWS | cSW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| G(1MA)G*CUGACCG*CUAGACAUAC | 1 |
| CUGACCG*CUAGACAUAC*G(1MA)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (1MA)*UGACC*UAGACAUA | 1 |
| UGACC*UAGACAUA*(1MA) | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-tSW-cWW-F-F-cSW-F-F-F-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.12 | Avg 0.06 | Max 0.12
Coloring options: