Motif J3_46124.1 Version J3_46124.1 of this group appears in releases 3.88 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 1-26 | 3-24 | 4-15 | 5-22 | 6-16 | 7-21 | 8-9 | 10-14 | 12-23 | 18-19 | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_5KPY_002 | 5KPY | 0.0000 | 2 | A | 5-hydroxytryptophan RNA aptamer | C | 18 | U | 19 | G | 20 | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | * | A | 44 | U | 45 | U | 46 | G | 47 | A | 48 | A | 49 | U | 51 | G | 52 | U | 54 | G | 55 | * | C | 71 | U | 72 | A | 73 | A | 74 | C | 75 | A | 76 | C | 77 | G | 78 | cWW | ntSH | ntHW | tWW | tSS | tHW | cWW | tWH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAUGAU*AUUGAAUUGUUG*CUAACACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAUGA*UUGAAUUGUU*UAACAC | 1 |
Release history
| Release | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-09-11 | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-tWH-tWH-F-tSS-cWW-tWW-F-F-F-F-F-cWW-F-cWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: