Motif J3_46124.1 Version J3_46124.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 1-26 | 2-6 | 4-15 | 7-22 | 8-24 | 10-11 | 13-25 | 14-23 | 16-21 | 18-19 | ||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | J3_5KPY_002 | 5KPY | 0.0000 | 2 | A | 5-hydroxytryptophan RNA aptamer | A | 44 | U | 45 | U | 46 | G | 47 | A | 48 | A | 49 | U | 51 | G | 52 | U | 54 | G | 55 | * | C | 71 | U | 72 | A | 73 | A | 74 | C | 75 | A | 76 | C | 77 | G | 78 | * | C | 18 | U | 19 | G | 20 | A | 21 | U | 22 | G | 23 | A | 24 | U | 25 | cWW | tWH | cWW | ntWH | tSS | cWW | tWH | tWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUGAUGAU*AUUGAAUUGUUG*CUAACACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UGAUGA*UUGAAUUGUU*UAACAC | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-tWH-tWH-F-tSS-cWW-tWW-F-F-F-F-F-cWW-F-cWW-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: